| Title: | Ready-to-Use Curated Gene Sets for 'cinaR' |
|---|---|
| Description: | Immune related gene sets provided along with the 'cinaR' package. |
| Authors: | Onur Karakaslar [aut, cre],
Duygu Ucar [aut] |
| Maintainer: | Onur Karakaslar <[email protected]> |
| License: | GPL-3 |
| Version: | 0.1.2 |
| Built: | 2024-11-24 05:09:55 UTC |
| Source: | https://github.com/eonurk/cinar-genesets |
Dice Major
data(dice.major)data(dice.major)
An object of class GMT; see read.gmt from qusage package.
Schmiedel et al. (2018) Immunity 175:1701-1715 (doi:10.1016/j.cell.2018.10.022)
PBMC scRNAseq modules
data(PBMC.scRNAseq)data(PBMC.scRNAseq)
An object of class GMT; see read.gmt from qusage package.
Márquez et al., 2020; Nehar-Belaid et al., 2020 doi:10.1038/s41590-020-0743-0 doi:10.1038/s41467-020-14396-9
Immune modules
data(VP2008)data(VP2008)
An object of class GMT; see read.gmt from qusage package.
Chaussabel et al. (2008) Immunity 29:150-164 (PubMed)
Wikipathways
data(wiki)data(wiki)
An object of class GMT; see read.gmt from qusage package.
Pico et al. (2008) PLOS Biology (doi:10.1371/journal.pbio.0060184)
Wikipathways inflammation
data(wiki.inf)data(wiki.inf)
An object of class GMT; see read.gmt from qusage package.
Pico et al. (2008) PLOS Biology (doi:10.1371/journal.pbio.0060184)