Package: seAMLess 0.1.2
E Onur Karakaslar
seAMLess: A Single Cell Transcriptomics Based Deconvolution Pipeline for Leukemia
Given a bulk transcriptomic (RNA-seq) sample of an Myeloid Leukemia patient calculates immune composition and drug resistance for different small-molecule inhibitors. Published in <https://www.nature.com/articles/s41698-024-00596-9>.
Authors:
seAMLess_0.1.2.tar.gz
seAMLess_0.1.2.zip(r-4.5)seAMLess_0.1.2.zip(r-4.4)seAMLess_0.1.2.zip(r-4.3)
seAMLess_0.1.2.tgz(r-4.5-any)seAMLess_0.1.2.tgz(r-4.4-any)seAMLess_0.1.2.tgz(r-4.3-any)
seAMLess_0.1.2.tar.gz(r-4.5-noble)seAMLess_0.1.2.tar.gz(r-4.4-noble)
seAMLess_0.1.2.tgz(r-4.4-emscripten)seAMLess_0.1.2.tgz(r-4.3-emscripten)
seAMLess.pdf |seAMLess.html✨
seAMLess/json (API)
| # Install 'seAMLess' in R: |
| install.packages('seAMLess', repos = c('https://eonurk.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/eonurk/seamless/issues
- exampleTCGA - TCGA-LAML bulk RNA-seq data downloaded from GDC
- exampleTCGAmeta - TCGA-LAML example data meta file downloaded from GDC
- grch38 - Grch38
- minRes - A minimal seAMLess result list object
- venoModel - Trained RF model on Venetoclax Resistance
Last updated 3 months agofrom:8d4df9881c. Checks:1 OK, 8 WARNING. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 19 2025 |
| R-4.5-win | WARNING | Mar 19 2025 |
| R-4.5-mac | WARNING | Mar 19 2025 |
| R-4.5-linux | WARNING | Mar 19 2025 |
| R-4.4-win | WARNING | Mar 19 2025 |
| R-4.4-mac | WARNING | Mar 19 2025 |
| R-4.4-linux | WARNING | Mar 19 2025 |
| R-4.3-win | WARNING | Mar 19 2025 |
| R-4.3-mac | WARNING | Mar 19 2025 |
Exports:cliseAMLessternaryPlotverboseFnwrangleMat
Dependencies:BiobaseBiocGenericsclicolorspacedata.tablefansifarvergenericsgetoptggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmeoptparsepillarpkgconfigR6RColorBrewerrlangscalestibbleutf8vctrsviridisLitewithr
