cinaR - A Computational Pipeline for Bulk 'ATAC-Seq' Profiles
Differential analyses and Enrichment pipeline for bulk 'ATAC-seq' data analyses. This package combines different packages to have an ultimate package for both data analyses and visualization of 'ATAC-seq' data. Methods are described in 'Karakaslar et al.' (2021) <doi:10.1101/2021.03.05.434143>.
Last updated 10 months ago
atac-seqdifferential-analysisenrichment-analysisgene-sets
5.52 score 13 stars 51 scripts 205 downloadsseAMLess - A Single Cell Transcriptomics Based Deconvolution Pipeline for Leukemia
Given a bulk transcriptomic (RNA-seq) sample of an Myeloid Leukemia patient calculates immune composition and drug resistance for different small-molecule inhibitors. Published in <https://www.nature.com/articles/s41698-024-00596-9>.
Last updated 3 months ago
amldeconvolutionvenetoclax
3.60 score 2 stars 7 scripts 609 downloadscinaRgenesets - Ready-to-Use Curated Gene Sets for 'cinaR'
Immune related gene sets provided along with the 'cinaR' package.
Last updated 4 years ago
diceenrichmentenrichment-analysisgene-setsgenesetspbmcwikipathways
3.35 score 3 stars 15 scripts 206 downloads