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cinaR - A Computational Pipeline for Bulk 'ATAC-Seq' Profiles
Differential analyses and Enrichment pipeline for bulk 'ATAC-seq' data analyses. This package combines different packages to have an ultimate package for both data analyses and visualization of 'ATAC-seq' data. Methods are described in 'Karakaslar et al.' (2021) <doi:10.1101/2021.03.05.434143>.
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atac-seqdifferential-analysisenrichment-analysisgene-sets
5.95 score 16 stars 56 scripts 229 downloadscinaRgenesets - Ready-to-Use Curated Gene Sets for 'cinaR'
Immune related gene sets provided along with the 'cinaR' package.
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diceenrichmentenrichment-analysisgene-setsgenesetspbmcwikipathways
3.41 score 3 stars 17 scripts 198 downloads